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Hello! I’m Anjali. I’m a board certified health coach, author, wife, mom and food lover from the SF Bay area (now living in Seattle, WA!); with a passion for delicious food and a desire to make healthy eating easy, tasty and fun! Learn more about me here and stay for a while!

Anjali Shah

Healthy Chocolate Chip Cookies

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While the original may have been invented by accident, my healthy chocolate chip cookies are deliberately wholesome and tasty! With their crisp edges and soft chewy center, these cookies deliver all the typical comforts, but with smarter ingredient swaps. I make these in just 1 hour, while my kids count down the seconds until they can eat them.

healthy chocolate chip cookies stacked on a cutting board, with one cookie broken for a closeup inside and milk in the background

I make these cookies with whole wheat flour, lentil flour, butter, and chocolate chips. Each cookie is 106 calories, meaning you can eat more of them and worry less! If you prefer a totally gluten-free option but still want that chocolatey goodness, you should try my almond flour cookies instead. 

I created this recipe after my child asked me if chocolate cookies were America’s favorite cookie. After a quick search on Google, we both learned that yes, they are indeed the most popular, iconic, and frequently homemade cookie in the U.S. I also learned that around 7 billion chocolate chip cookies are eaten annually. Wow! But if you are part of the group that prefers a less chocolatey cookie, you should try my snickerdoodle cookies. I knew then that I needed to create and perfect a version that would feed the health-conscious percentage of the world.

When it comes to desserts, I believe that they should taste and look indulgent, no matter what the ingredients are. These cookies were born out of my desire to create a chocolate chip cookie that did not rely on refined flours and sugars. As a mom, I can give these to my kids without worrying about any less-than-healthy ingredients. It also means I allow them to have a little more than I would with store-bought cookies. 

The balance in these cookies is what makes them truly special. The combination of whole wheat and lentil flour gives them a subtle nutty flavor, while adding fiber and protein. Lentil flour is also rich in iron, potassium, and magnesium. The coconut and brown sugar provide a sweetness and caramel flavor, without being too cloying. And of course, the dark chocolate chips add a full-bodied depth and melty richness to every bite. 

This recipe makes about 60 cookies, which makes it ideal for lunchboxes, bake sales, and of course, gift baskets. Last Valentines day, I decided to say I love you with chocolate. I made my husband a basket filled with these chocolate chip cookies, brownies, and roses, because men deserve flowers too. My kids saw the basket and seemed sad that they were not getting anything. I was way ahead of them. Ha! I made each of them mini baskets, too, because in my house, I am cupid! So, I encourage you to make these the next time you need to show some love.

Latest Recipe Video!

🥘 Ingredients

These healthy chocolate chip cookies do not stray too far from the classic recipe. I just made sure to include some thoughtful swaps to make them lighter and more nourishing.

ingredients for healthy chocolate chip cookies

Whole wheat flour: I use whole wheat flour for added fiber.

Lentil flour: Lentil flour boosts the protein and nutritional value while giving my cookies structure without heaviness.

Baking soda: This is what I use to give my cookies a rise.

Sea salt: I use sea salt to enhance the sweetness and bring out the flavor of the chocolate chips.

Butter: I use softened butter to achieve that classic cookie texture.

Coconut sugar and brown sugar: These are the sugars I use for a more balanced sweetness without using refined sugar.

Eggs: I use eggs to bind everything together.

Vanilla extract: Vanilla extract adds warmth and depth to my cookies and enhances the chocolate flavor.

Agave or Maple syrup: This is the healthy alternative I use for rounding out the sweetness in my cookies.

Dark chocolate chips: I love using dark chocolate chips for a rich contrast that does not add more sweetness.

Chopped nuts: These are optional, but I add chopped walnuts for healthy fats and a slight crunch. 

🔪 How To Make

These healthy chocolate chip cookies are straightforward and come together easily. Just make sure you do not rush the mixing process.

Combine dry ingredients: I start by preheating my oven to 350F. Then, in a medium bowl, I whisk together the whole wheat flour, lentil flour, baking soda, and salt until well combined.

dry ingredients mixed in a bowl

Mix wet ingredients: In a large bowl, I beat my softened butter, coconut sugar, brown sugar, and vanilla extract until light and creamy. Next, I add in the eggs and agave, and mix until fully incorporated.

cookie dough in a bowl

Combine wet and dry together: I gradually add my dry ingredients to the wet mixture, and mix until just combined.

cookie dough in a bowl

Add in choc chips: Next, I gently stir in my chocolate chips and chopped nuts until evenly dispersed.

chocolate chips added to cookie dough in a mixing bowl

Spoon onto prepared sheet: Then I drop tablespoons of dough onto an ungreased baking sheet or silicone baking mat.

cookie dough on a baking sheet

Bake: Finally, I bake in batches for 9 to 11 minutes, or until the edges are golden brown, and the center is still slightly soft. I cool my cookies on a wire rack and allow them to set completely.

cookies on a baking sheet

My #1 Secret Tip for this healthy chocolate chip cookie recipe is to not overmix the dough. Once I have added the flour mixture, I mix until it is just combined. Overmixing develops too much gluten and creates flat, dense cookies instead of light, chewy ones.

Other Tips To Keep In Mind:

  • Softened, not melted: I make sure my butter is softened and not melted. This way I can cream the ingredients into the butter easily. Melted butter changes the texture and may cause oiliness and excessive spreading.
  • Do not grease the tray: These cookies already contain butter, and will not stick to your baking tray. Any additional oil or grease may cause your cookies to spread or burn. 
  • Use an ice cream scoop: I like using an ice cream scoop with a tablespoon of cookie dough. This gives me a cleaner process and better control.
  • Check your baking soda: I always check the expiry date on my baking soda before using it. Expired baking soda will result in flat cookies. 

📖 Variations

These cookies are easy to customize based on dietary requirements or personal preferences. These are some of the ways I have made these cookies:

Oatmeal chocolate chip cookie: For an oatmeal chocolate chip cookie, I replace half of the lentil flour with oat flour and stir in 2 tablespoons of rolled oats for additional texture. My kids love this one, as they think that since it contains oats, it’s fine to have for breakfast. Ha!

Vegan variety: When I want to make a strictly vegan batch, I use vegan butter, flax eggs, and dairy-free chocolate chips. I have had so many orders and requests for this version from the moms at school.

Gluten-free goodness: For a gluten-free cookie, I swap the whole wheat flour for a 1:1 gluten-free baking blend or oat flour. This is what I make when I am trying to do a low-carb week, but still want access to chocolate. 

🍽 Serving Suggestions

I love having these healthy chocolate chip cookies slightly warm with a glass of milk. My kids prefer them cooled, so they can dunk them into glasses of my chocolate milk tea for an alternative take on a classic pairing. And then there is my husband… He likes his chocolate chip cookies with a side of my protein hot chocolate. Which of these pairings are you going to try first? I recommended ALL of them. 

Last fall, I decided to switch things up, and instead of my usual jar of vegan pumpkin chocolate chip cookies, I decided to make these healthy chocolate chip cookies instead. But on that day, my patience began to run low, and I did not have the energy to scoop out all the little blobs. Instead, I decided to bake several giant cookies. That night, I sandwiched some of my caramel nice cream between two cookies and created my own take on an ice cream sandwich! 

🧊 Storing And ♨️ Reheating

Refrigeration: I store them in an airtight container at room temperature, and they keep for up to 5 days. They can be refrigerated for up to 1 week, but the texture may change.

Freezing: I freeze baked cookies in a sealed container for up to 3 months. I also like to freeze unbaked dough balls and bake directly from frozen, just adding on another 1-2 minutes of oven time.

Reheating: I warm my cookies in the microwave for 10 -15 seconds. This brings back the fresh out of the oven softness.

healthy chocolate chip cookies stacked on a cutting board, with one cookie broken for a closeup inside and milk in the background

❓Recipe FAQs

Why did my cookies turn out dry?

Dry cookies usually mean too much flour or overbaking. That is why I measure carefully by leveling out the cups of flour and keeping a close eye on the oven. If they are too dry, they are not a loss. I like taking dry cookies and crumbling them for ice cream or pudding toppings. 

Can I reduce the sugar even more?

Yes! I use 1/2 cup coconut sugar and 1/2 cup brown sugar to lower the total sugar per cookie, without losing any sweetness.

Can I use a different type of chocolate chips?

Yes, by all means! I have used milk chocolate chips, white chocolate chips, and even a mixture of both. This is definitely something you can do if you want your cookies extra sweet. 

healthy chocolate chip cookies stacked on a cutting board, with one cookie broken for a closeup inside

Love this dessert recipe? Please leave a 5-star rating 🌟 in the recipe below and/or a review in the comment section further down the page!

You can also FOLLOW ME on FACEBOOK, INSTAGRAM, and PINTEREST to see more delicious, healthy, family-friendly food, and if you have any questions, I’m here to help!

🎥 Watch How to Make It

healthy chocolate chip cookies stacked on a cutting board, with one cookie broken for a closeup inside and milk in the background
Print Recipe
5 from 9 votes

Healthy Chocolate Chip Cookies

While the original may have been invented by accident, my healthy vegan choc chip cookies are deliberately wholesome and tasty! With their crisp edges and soft chewy center, these cookies deliver all the typical comforts, but with smarter ingredient swaps. I make these in just 1 hour, while my kids count down the seconds until they can eat them.
Prep Time49 minutes
Cook Time11 minutes
Total Time1 hour
Course: Baking, Dessert
Cuisine: American
Servings: 60 cookies (5 dozen)
Calories: 106kcal
Author: Anjali Shah

Ingredients

Instructions

  • Preheat oven to 350 degrees.
  • Combine flours, salt and baking soda in a small bowl.
  • Beat butter, sugars and vanilla extract in a large mixing bowl until creamy.
  • Add eggs and syrup, beating well.
  • Gradually beat in flour mixture.
  • Stir in chocolate chips and nuts.
  • Drop by rounded tablespoons onto ungreased baking sheets.
  • Bake 9 – 11 minutes or until brown.

Notes

  • My #1 Secret Tip for this healthy chocolate chip cookie recipe is to not overmix the dough. Once I have added the flour mixture, I mix until it is just combined. Overmixing develops too much gluten and creates flat, dense cookies instead of light, chewy ones.
  • Softened, not melted: I make sure my butter is softened and not melted. This way I can cream the ingredients into the butter easily. Melted butter changes the texture and may cause oiliness and excessive spreading.
  • Do not grease the tray: These cookies already contain butter, and will not stick to your baking tray. Any additional oil or grease may cause your cookies to spread or burn. 
  • Use an ice cream scoop: I like using an ice cream scoop with a tablespoon of cookie dough. This gives me a cleaner process and better control.
  • Check your baking soda: I always check the expiry date on my baking soda before using it. Expired baking soda will result in flat cookies. 

Nutrition

Serving: 1cookie | Calories: 106kcal | Carbohydrates: 14g | Protein: 1.2g | Fat: 5.9g | Sodium: 42.9mg | Fiber: 0.5g | Sugar: 10.5g

36 responses to “Healthy Chocolate Chip Cookies”

5 from 9 votes

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