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Hello! I’m Anjali. I’m a board certified health coach, author, wife, mom and food lover from the SF Bay area (now living in Seattle, WA!); with a passion for delicious food and a desire to make healthy eating easy, tasty and fun! Learn more about me here and stay for a while!

Anjali Shah

Healthy Pumpkin Brownies

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I absolutely love making my Healthy Pumpkin Brownies, they’re rich, chocolatey, and full of fall flavors. It takes me only 15 minutes of prep and they’re my favorite low calorie treat when I want something easy, delicious, and packed with wholesome ingredients.

Healthy pumpkin brownies stacked on a white pedestal, with cinnamon, chocolate chips and pumpkin in the background.

Pumpkin season is my absolute favorite time of year, and I can’t get enough of my pumpkin brownies, they’re so easy to make, perfectly chewy, and sweet. They fill my home with cozy scents of autumn, just like my pumpkin apple pie recipe.

I love hosting Thanksgiving and Christmas parties, and my pumpkin brownies have always been a crowd-pleaser for the kids. For those little ones who prefer pie “like my daughter” I make sure to have my pumpkin apple pie ready to keep even the pickiest eaters happy! 🙂

When I bake, I always try to keep the rich, decadent flavors we all love while sneaking in a few healthy swaps to make the recipe just a little better for you. That’s exactly what I love about my healthy pumpkin brownies. They’re still sweet, they’re still fudgy, and yes, there’s still butter and sugar but in just the right amounts, paired with wholesome ingredients like pumpkin puree and applesauce to keep them moist and flavorful without overloading on calories.

What makes these brownies so special is how perfectly they balance indulgence and health. They’re a treat that satisfies your sweet tooth while still feeling like a better choice than traditional brownies. When I take a bite, I love the dense, chewy texture, and that rich chocolate flavor. It’s everything you want in a dessert, but with a little less guilt.

Most importantly, these brownies are incredibly versatile! Whether I’m baking for a friend who’s gluten-free, making a vegan version for my daughter’s school event, or experimenting with my own twist, this recipe never lets me down.
These aren’t just brownies, they’re my way of combining the comfort of baking with the joy of healthier choices, and I hope you’ll love them as much as I do.

Latest Recipe Video!

🥘 Ingredients

I don’t think you need to hunt far for the ingredients in this recipe, they’re everyday staples you likely already have on hand. These are the main ones to bake these delicious brownies in no time.

Ingredients for easy layered healthy pumpkin brownies recipe on a white background.
  • Whole Wheat Pastry Flour: I love using this for its added fiber and lighter texture. It’s a healthier swap for regular all-purpose flour.
  • Canned Pumpkin Puree: This is the key to making these brownies moist and naturally sweet. Just make sure to grab pure pumpkin puree, not pie filling.
  • Cacao Powder & Dark Chocolate Chips: These give the brownies their rich, deep chocolate flavor. I like to use 70% dark chocolate for that extra indulgence.
  • Spices: A little cinnamon, cloves, and nutmeg go a long way to add cozy fall vibes. They make these brownies smell amazing while baking!

🍲 Substitutions

  • Butter Alternatives: I like to swap butter with 1/2 cup of coconut oil or 1/2 cup of pureed avocado for a healthier twist. It keeps the brownies rich, moist, and perfect for a vegan option!
  • Chocolate: I like using baking chocolate when I’m out of cacao powder. It gives the same deep.
  • Puree: I’ll use sweet potato puree or butternut squash puree instead. They both work perfectly and give the brownies a similar flavor
  • Gluten-Free: For gluten-free pumpkin brownies, I use Bob’s Red Mill 1:1 Gluten-Free Baking Flour.

🔪 How To Make

Here’s how I make my healthy pumpkin brownie recipe, it’s so simple and always turns out perfectly.

Mix Dry Ingredients: I start by preheating the oven to 350°F and lining an 8×8 baking dish with parchment paper or giving it a quick spray with cooking spray. Then, in a large bowl, I mix the flour, salt, and baking powder and set it aside.

Mix Wet Ingredients: In another bowl, I cream together the sugar and butter until smooth. Then I mix in the flax eggs, applesauce, and vanilla, making sure everything is well combined.

butter and sugar creamed in a bowl

Combine Wet And Dry Ingredients: I pour the wet ingredients into the dry ingredients and gently stir with a spatula until just combined. Then, I divide the batter by pouring half of it into another bowl.

wet and dry ingredients mixed together in a bowl

Prepare Chocolate Batter: To the first bowl, I fold in the soy milk, cocoa powder, and chocolate chips, making sure everything is evenly mixed.

chocolate chips added to batter

Make Pumpkin Batter: In the second bowl, I stir in the pumpkin puree and spices until well combined. Now I have two bowls of batter-one with the warm pumpkin flavors and one with the rich chocolate mixture.

pumpkin batter in a bowl

Prepare Chocolate Base: I pour the chocolate brownie batter into the prepared baking dish and spread it out evenly to form a smooth layer on the bottom.

chocolate batter spread in a pan

Add Pumpkin Batter: Then I pour the pumpkin batter on top and spread in an even layer.

pumpkin batter spread on top of chocolate batter

Bake: I place the baking dish in the preheated oven and bake for 25-30 minutes, checking with a toothpick to make sure it comes out clean. Once done, I let the brownies cool completely to room temperature before cutting them into squares and serving.

Low calorie, healthy pumpkin brownies on parchment paper.

My #1 Secret Tip for making my healthy pumpkin brownies is to tap the pan on the counter after adding the batter. I always lift the pan a few inches and give it a good tap, it helps get rid of air bubbles and smooths out the layers perfectly. It’s such a simple step, but it makes a huge difference in how the brownies bake and look. Trust me, this little trick is a game-changer for achieving those clean, even layers!

Other Tips To Keep In Mind:

  • Mix Separately: I always mix the wet and dry ingredients in separate bowls before combining them. This ensures the dry ingredients are evenly dispersed, making the batter smooth and easy to work with.
  • Add Wet to Dry: When combining the two, I always add the wet ingredients to the dry ones, not the other way around. It’s so much easier to mix, and it prevents lumps from forming.
  • Extra Parchment Paper: I prefer using parchment paper instead of cooking spray. I let it drape over the sides of the pan, so once the brownies are cooled, I can lift them out easily for neat, clean slices.
  • The Best Cocoa Powder for Baking: I always recommend using a high-quality Dutch process cocoa powder. Its higher fat content and deep chocolate flavor make these brownies extra rich and indulgent.

📖 Variations

These healthy pumpkin sweet treats are so versatile, and you can easily switch things up to make them your own.

Make Pumpkin Muffins: I love turning these into brownie bites using a muffin tin. Just fill each cup 3/4 full and bake at 375°F for 25-30 minutes.

Flourless Pumpkin Brownies: for a gluten-free option, I use my favorite flourless gluten free brownies for the chocolate layer and follow the same pumpkin layer from this recipe. It’s so easy and delicious!

Healthy Pumpkin Protein Brownies: I add one scoop of my favorite chocolate protein powder to the batter!

🍽 Serving Suggestions

My Healthy Pumpkin Brownies are one of those desserts that make any fall gathering feel extra special. I love serving them with:

Ice Cream: I love topping them with a scoop of tofu ice cream, lychee ice cream, or caramel nice cream for an indulgent treat.

Coffee: A warm cup of coffee with a sprinkle of pumpkin spice pairs perfectly with these brownies. For a fun twist on regular coffee, I like enjoying these pumpkin brownies with a beetroot latte or my creamy mocha latte. It’s such a delicious pairing!

Milk: I love pairing these with a cold glass of milk. For something extra special, try them with milk chocolate milk tea with boba.

🫙 Storage Directions

  • Room Temperature: I store these easy homemade brownies in an airtight container at room temperature and enjoy them the next day. They will actually last for up to 4 days (but I’d be surprised if they were around that long! 🙂 ).
  • Refrigeration: If I have any extra brownies left after 4 days, I get a couple more days of shelf life out of them by putting them in the fridge. To reheat, just microwave them for 20 seconds.
  • Freezing: I wrap leftover pumpkin brownies tightly in plastic wrap and freeze for up to 3 months.

❓Recipe FAQs

Can I use pumpkin instead of oil in brownie mix?

Absolutely! I love using unsweetened pumpkin puree as a 1:1 replacement for oil in brownies, 1 cup of oil equals 1 cup of pumpkin puree. If the recipe calls for butter, I swap in ¾ cup of pumpkin puree for every 1 cup of butter, and it works perfectly!

What makes brownies more chewy?

To make chewy brownies instead of cakey or fudgy ones, I’ve found a few tricks that work perfectly. I like using a mix of vegetable oil and butter, slightly underbaking the brownies by 1-2 minutes, or chilling them in the fridge for up to an hour after baking. These steps always give me that dense, chewy texture that’s so satisfying!

Easy healthy pumpkin brownies on parchment paper.

🍰 More Brownies Desserts!

Love this plant based dessert recipe? Please leave a 5-star rating 🌟 in the recipe below and/or a review in the comments section further down the page!

You can also FOLLOW ME on FACEBOOK, INSTAGRAM, and PINTEREST to see more delicious, healthy, family-friendly food, and if you have any questions, I’m here to help!

📋 Recipe Card

🎥 Watch How to Make It

https://youtu.be/IoPsZPlvPYg
Print Recipe
5 from 33 votes

Healthy Pumpkin Brownies

I absolutely love making my Healthy Pumpkin Brownies, they’re rich, chocolatey, and full of fall flavors. It takes me only 15 minutes of prep and they’re my favorite low calorie treat when I want something easy, delicious, and packed with wholesome ingredients.
Prep Time15 minutes
Cook Time45 minutes
Total Time1 hour
Course: Baking, Dessert
Cuisine: American
Diet: Low Calorie, Vegetarian
Servings: 12 pieces
Calories: 140kcal
Author: Anjali Shah

Ingredients

Shop Ingredients on Jupiter

Instructions

  • Preheat oven to 350°F. Line a 8×8 baking dish with parchment paper or spray with cooking spray. In a large bowl, combine the flour, salt and baking powder. Set aside.
  • In another bowl, cream together the sugar and butter. Then mix in the flax eggs, applesauce and vanilla until well combined.
  • Pour wet ingredients into dry ingredients. Stir together with a spatula just until well combined. Then pour half of this batter into the other bowl. To the first bowl, fold in the soy milk, cocoa powder and chocolate chips.
  • To the second bowl, stir in pumpkin puree and the spices.
  • Pour the chocolate batter into the baking dish and spread in an even layer across the bottom.
  • Then pour the pumpkin batter on top and spread in an even layer.
  • Bake in preheated oven for 25-30 minutes, or until a toothpick inserted comes out clean. Allow to cool to room temperature before cutting and serving.

Notes

  • Tap the pan on the counter after adding the batter. I always lift the pan a few inches and give it a good tap, it helps get rid of air bubbles and smooths out the layers perfectly. 
  • Make sure you use unsweetened pumpkin puree, not pumpkin pie filling for this recipe.
  • If you don’t have cinnamon, cloves and nutmeg, you can use the equivalent amount of pumpkin pie spice (3 tsp total) in this recipe.
  • I always recommend using a high-quality Dutch process cocoa powder. Its higher fat content and deep chocolate flavor make these brownies extra rich and indulgent.
  • I prefer using parchment paper instead of cooking spray. I let it drape over the sides of the pan, so once the brownies are cooled, I can lift them out easily for neat, clean slices.
  • I always mix the wet and dry ingredients in separate bowls before combining them. This ensures the dry ingredients are evenly dispersed, making the batter smooth and easy to work with.
  • Note: These brownies are not overly sweet. They have more of a dark chocolate flavor. If you want a sweeter, more traditional brownie, you will have to increase the sugar (up to 1 cup for a traditional brownie level of sweetness). But that will give each brownie about 27 grams of sugar, making it much more like a traditional brownie, but not as healthy for you!
Note: Nutrition info calculated using whole wheat pastry flour, 1/3 cup brown sugar, applesauce + butter and flax eggs

Nutrition

Serving: 1brownie | Calories: 140kcal | Carbohydrates: 21.2g | Protein: 2.1g | Fat: 7g | Saturated Fat: 4.1g | Sodium: 177.1mg | Potassium: 25mg | Fiber: 2.9g | Sugar: 9.8g

64 responses to “Healthy Pumpkin Brownies”

  1. I love the layers! These turned out so good, I’ll make them often this fall and tuck them into the kids’ lunch boxes for a healthy snack.5 stars

  2. These healthy pumpkin brownies are perfect for my kids lunches this october! Saving this recipe for pumpkin season!5 stars

  3. I love this layered look. These brownies are so perfect for the fall! Making them this weekend, thank you so much for the recipe 🙂5 stars

  4. I love that these are that bit healthier and they look great with the two layers, too. Looking forward to giving these a try.5 stars

  5. During fall, my family’s all about chocolate and pumpkin. These layered brownies were amazing! They were easy to make and so delicious.5 stars

  6. This looks absolutely gorgeous. Although I love brownies, I am not familiar with pumpkin since it is not really my favorite vegetable. But because this looks delicious, I will definitely give it a try.5 stars

    • The pumpkin complements the chocolate in these brownies perfectly! You have to let me know how you like it!

5 from 33 votes (6 ratings without comment)

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